International (EU):
European Grid Infrastructure
(EGI-Engage, Horizon 2020 EU, grant №654142)
- EGI Federated Cloud (JRA2.4) Accelerated Computing. IaaS-type cloud, made of academic private clouds and virtualised resources and built around open standards. Its development is driven by requirements of the scientific community.
Status: Finished
Start Date: 2015
End Date: 2018
Leader: Dr. Viet Tran (Institute of Informatics, Slovak Republic)
Workgroup: Dr. Oleksandr Savytskyi, Dr. Andrii Salnikov
Websites: http://accelerated.ui.sav.sk and https://www.egi.eu/federation/egi-federated-cloud/
- EGI-Engage:WP4 (JRA2.4) Accelerated Computing. Technologies for using GPUs in grid and cloud. Analysis of requirements from user communities.
Status: Finished
Start Date: 2015
End Date: 2018
Leader: Dr. Marco Verlato (INFN, Italy)
Website: https://wiki.egi.eu/wiki/EGI-Engage:WP4
- VT GPGPU (the Virtual Team project aims to collect detailed requirements from existing and new EGI user communities and their support teams about using GPGPU services in the European Grid Infrastructure).
Status: Finished
Start Date: 2012
End Date: 2013
Leader: Dr. John Walsh (TCD, Ireland)
Website: https://wiki.egi.eu/wiki/VT_GPGPU
CASPUR/CINECA (Grant №std12-099)
- Project is focused on molecular dynamics of human tyrosyl-tRNA synthetase (HsTyrRS) structure, associated with Charcot-Marie-Tooth neuropathy type C. It was supported by “Standard HPC Grant 2012” on Matrix cluster (100 000 CPU hours) from CASPUR scientific research program, Roma, Italy.
Status: Finished
Start Date: 2012
End Date: 2013
Leader: Dr. Tullio Scopigno (Università di Roma – la Sapienza, Italy),
Workgroup: Dr. Oleksandr Savytskyi, Prof. Taras Bryk
Website: https://www.cineca.it/en
NVIDIA’s Tesla Bio Workbench Project
- Recently the GPU Test Drive system was installed in Ukraine within the scope of NVIDIA’s Tesla Bio Workbench Project. This project aims at evaluation of performance of molecular dynamics simulations and trajectory analysis computations employing GPU accelerator support in specialized software including GROMACS 4.5, AMBER 11 and NAMD 2.7.
The test system was equipped with two Tesla C2050 GPGPUs (General-purpose computing on graphics processing units) with the latest drivers and CUDA (Compute Unified Device Architecture) toolkit, 4 GB of RAM and high-performance Intel Core i7 CPU. OpenMPI was also installed to have ability to compare GPGPU and multicore CPU performance.
Status: Finished
Start Date: 2010
End Date: 2011
Leader: nVidia, Ustar
Workgroup: Dr. Oleksandr Savytskyi, Dr. Ievgen Sliusar, Dr. Stirenko Sergii, Dr. Andrii Salnikov
Paper: Savytskyi, O. V., Sliusar, I. A., Yesylevskyy, S. O., Stirenko, S. G., & Kornelyuk, A. I. (2011). INTEGRATED TOOLS FOR MOLECULAR DYNAMICS SIMULATION DATA ANALYSIS IN THE MOLDYNGRID VIRTUAL LABORATORY. Proceedings of the 6-th IEEE International Conference on Intelligent Data Acquisition and Advanced Computing Systems: Technology and Applications, IDAACS 2011, 1, 209-211. PDF
